V4AEX3_LOTGI protein (Lottia gigantea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V4AEX3_LOTGI

Uncharacterized protein. (316 aa)

Predicted Functional Partners:

V4BHC8_LOTGI

0.710

V3Z6H2_LOTGI

0.546

V4A8Z0_LOTGI

0.546

V3Z5T7_LOTGI

0.542

V3ZN44_LOTGI

0.510

V3ZY68_LOTGI

0.425

V3Z307_LOTGI

0.423

V3ZQS5_LOTGI

0.423

V3ZZU7_LOTGI

0.423

V4A486_LOTGI

0.423

Your Current Organism:

Lottia gigantea

NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V3Z307_LOTGI	V3ZQS5_LOTGI	V3Z307	V3ZQS5	Uncharacterized protein.	Uncharacterized protein.	0.900
V3Z307_LOTGI	V3ZZU7_LOTGI	V3Z307	V3ZZU7	Uncharacterized protein.	Uncharacterized protein.	0.814
V3Z307_LOTGI	V4AEX3_LOTGI	V3Z307	V4AEX3	Uncharacterized protein.	Uncharacterized protein.	0.423
V3Z307_LOTGI	V4BHC8_LOTGI	V3Z307	V4BHC8	Uncharacterized protein.	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	0.797
V3Z5T7_LOTGI	V4AEX3_LOTGI	V3Z5T7	V4AEX3	Uncharacterized protein.	Uncharacterized protein.	0.542
V3Z5T7_LOTGI	V4BHC8_LOTGI	V3Z5T7	V4BHC8	Uncharacterized protein.	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	0.431
V3Z6H2_LOTGI	V3ZN44_LOTGI	V3Z6H2	V3ZN44	Protein kinase domain-containing protein.	RanGAP1_C domain-containing protein.	0.409
V3Z6H2_LOTGI	V4AEX3_LOTGI	V3Z6H2	V4AEX3	Protein kinase domain-containing protein.	Uncharacterized protein.	0.546
V3ZN44_LOTGI	V3Z6H2_LOTGI	V3ZN44	V3Z6H2	RanGAP1_C domain-containing protein.	Protein kinase domain-containing protein.	0.409
V3ZN44_LOTGI	V4A8Z0_LOTGI	V3ZN44	V4A8Z0	RanGAP1_C domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.518
V3ZN44_LOTGI	V4AEX3_LOTGI	V3ZN44	V4AEX3	RanGAP1_C domain-containing protein.	Uncharacterized protein.	0.510
V3ZQS5_LOTGI	V3Z307_LOTGI	V3ZQS5	V3Z307	Uncharacterized protein.	Uncharacterized protein.	0.900
V3ZQS5_LOTGI	V3ZZU7_LOTGI	V3ZQS5	V3ZZU7	Uncharacterized protein.	Uncharacterized protein.	0.644
V3ZQS5_LOTGI	V4AEX3_LOTGI	V3ZQS5	V4AEX3	Uncharacterized protein.	Uncharacterized protein.	0.423
V3ZQS5_LOTGI	V4BHC8_LOTGI	V3ZQS5	V4BHC8	Uncharacterized protein.	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	0.699
V3ZY68_LOTGI	V4AEX3_LOTGI	V3ZY68	V4AEX3	Uncharacterized protein.	Uncharacterized protein.	0.425
V3ZZU7_LOTGI	V3Z307_LOTGI	V3ZZU7	V3Z307	Uncharacterized protein.	Uncharacterized protein.	0.814
V3ZZU7_LOTGI	V3ZQS5_LOTGI	V3ZZU7	V3ZQS5	Uncharacterized protein.	Uncharacterized protein.	0.644
V3ZZU7_LOTGI	V4A486_LOTGI	V3ZZU7	V4A486	Uncharacterized protein.	Uncharacterized protein.	0.443
V3ZZU7_LOTGI	V4AEX3_LOTGI	V3ZZU7	V4AEX3	Uncharacterized protein.	Uncharacterized protein.	0.423