V4AFN6_LOTGI protein (Lottia gigantea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V4AFN6_LOTGI

Uncharacterized protein; Belongs to the peptidase C14A family. (199 aa)

Predicted Functional Partners:

V4A2D2_LOTGI

0.944

V4A8L9_LOTGI

0.907

V4AJX4_LOTGI

0.879

V4B1P3_LOTGI

0.741

V4A4Z9_LOTGI

0.725

V4A1M2_LOTGI

0.716

V4BHZ2_LOTGI

0.690

V4A3D7_LOTGI

0.627

V4BQ67_LOTGI

0.610

V4BHC8_LOTGI

0.597

Your Current Organism:

Lottia gigantea

NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V4A1M2_LOTGI	V4AFN6_LOTGI	V4A1M2	V4AFN6	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.716
V4A2D2_LOTGI	V4AFN6_LOTGI	V4A2D2	V4AFN6	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.944
V4A2D2_LOTGI	V4AJX4_LOTGI	V4A2D2	V4AJX4	Uncharacterized protein.	Uncharacterized protein.	0.996
V4A2D2_LOTGI	V4B1P3_LOTGI	V4A2D2	V4B1P3	Uncharacterized protein.	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	0.918
V4A2D2_LOTGI	V4BHC8_LOTGI	V4A2D2	V4BHC8	Uncharacterized protein.	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	0.474
V4A2D2_LOTGI	V4BQ67_LOTGI	V4A2D2	V4BQ67	Uncharacterized protein.	Uncharacterized protein.	0.544
V4A3D7_LOTGI	V4AFN6_LOTGI	V4A3D7	V4AFN6	UBA_5 domain-containing protein.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.627
V4A4Z9_LOTGI	V4AFN6_LOTGI	V4A4Z9	V4AFN6	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.725
V4A8L9_LOTGI	V4AFN6_LOTGI	V4A8L9	V4AFN6	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.907
V4AFN6_LOTGI	V4A1M2_LOTGI	V4AFN6	V4A1M2	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.716
V4AFN6_LOTGI	V4A2D2_LOTGI	V4AFN6	V4A2D2	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.944
V4AFN6_LOTGI	V4A3D7_LOTGI	V4AFN6	V4A3D7	Uncharacterized protein; Belongs to the peptidase C14A family.	UBA_5 domain-containing protein.	0.627
V4AFN6_LOTGI	V4A4Z9_LOTGI	V4AFN6	V4A4Z9	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.725
V4AFN6_LOTGI	V4A8L9_LOTGI	V4AFN6	V4A8L9	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.907
V4AFN6_LOTGI	V4AJX4_LOTGI	V4AFN6	V4AJX4	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.879
V4AFN6_LOTGI	V4B1P3_LOTGI	V4AFN6	V4B1P3	Uncharacterized protein; Belongs to the peptidase C14A family.	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	0.741
V4AFN6_LOTGI	V4BHC8_LOTGI	V4AFN6	V4BHC8	Uncharacterized protein; Belongs to the peptidase C14A family.	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	0.597
V4AFN6_LOTGI	V4BHZ2_LOTGI	V4AFN6	V4BHZ2	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.690
V4AFN6_LOTGI	V4BQ67_LOTGI	V4AFN6	V4BQ67	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.610
V4AJX4_LOTGI	V4A2D2_LOTGI	V4AJX4	V4A2D2	Uncharacterized protein.	Uncharacterized protein.	0.996