STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V4AGY6_LOTGINUC153 domain-containing protein. (686 aa)    
Predicted Functional Partners:
V3ZXT5_LOTGI
Bms1-type G domain-containing protein.
   
 
 0.999
V4AH55_LOTGI
WD_REPEATS_REGION domain-containing protein.
   
 
 0.999
V3Z767_LOTGI
Nucleolar protein 6.
   
 
 0.998
V4ARX6_LOTGI
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
   
 
 0.998
V4B1L4_LOTGI
Uncharacterized protein.
   
 
 0.998
V4B4L0_LOTGI
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 
 0.998
V4BC92_LOTGI
Uncharacterized protein.
   
 
 0.998
V4A7N2_LOTGI
Uncharacterized protein.
   
 
 0.997
V4BA12_LOTGI
Uncharacterized protein.
   
 
 0.997
V4BC30_LOTGI
Uncharacterized protein.
   
 
 0.997
Your Current Organism:
Lottia gigantea
NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.