STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V4AI26_LOTGISAGA-associated factor 11 homolog; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. (95 aa)    
Predicted Functional Partners:
V4ADB6_LOTGI
Uncharacterized protein.
    
 0.980
V4A8Q5_LOTGI
SCA7 domain-containing protein.
    
 0.968
V4B961_LOTGI
Ubiquitin carboxyl-terminal hydrolase.
    
 0.966
V3Z331_LOTGI
TFIID_20kDa domain-containing protein.
    
 0.964
V4BFP3_LOTGI
Uncharacterized protein.
    
 0.959
V3ZBS4_LOTGI
Uncharacterized protein.
    
 0.952
V4BW26_LOTGI
Uncharacterized protein.
    
 0.933
V4C835_LOTGI
SANT domain-containing protein.
    
 0.917
V4AKX9_LOTGI
SGF29 C-terminal domain-containing protein.
    
 0.908
V4BRI6_LOTGI
Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.
    
 0.908
Your Current Organism:
Lottia gigantea
NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet
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