V4AJE4_LOTGI protein (Lottia gigantea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V4AJE4_LOTGI

Ncstrn_small domain-containing protein. (694 aa)

Predicted Functional Partners:

V4A814_LOTGI

0.998

V4AKW6_LOTGI

0.998

V4B908_LOTGI

0.996

V4BGJ2_LOTGI

0.910

V4AC86_LOTGI

0.645

V4A0F8_LOTGI

0.635

V4BAL3_LOTGI

0.633

V4A709_LOTGI

0.565

V3ZVW9_LOTGI

0.559

V3ZBV4_LOTGI

0.501

Your Current Organism:

Lottia gigantea

NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V3ZBV4_LOTGI	V4AJE4_LOTGI	V3ZBV4	V4AJE4	A4_EXTRA domain-containing protein.	Ncstrn_small domain-containing protein.	0.501
V3ZBV4_LOTGI	V4B908_LOTGI	V3ZBV4	V4B908	A4_EXTRA domain-containing protein.	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.512
V3ZVW9_LOTGI	V4A814_LOTGI	V3ZVW9	V4A814	Uncharacterized protein.	Uncharacterized protein.	0.416
V3ZVW9_LOTGI	V4AJE4_LOTGI	V3ZVW9	V4AJE4	Uncharacterized protein.	Ncstrn_small domain-containing protein.	0.559
V4A0F8_LOTGI	V4AJE4_LOTGI	V4A0F8	V4AJE4	PID domain-containing protein.	Ncstrn_small domain-containing protein.	0.635
V4A0F8_LOTGI	V4BAL3_LOTGI	V4A0F8	V4BAL3	PID domain-containing protein.	Uncharacterized protein.	0.412
V4A0F8_LOTGI	V4BGJ2_LOTGI	V4A0F8	V4BGJ2	PID domain-containing protein.	Uncharacterized protein.	0.910
V4A709_LOTGI	V4AJE4_LOTGI	V4A709	V4AJE4	Peptidase_S9 domain-containing protein.	Ncstrn_small domain-containing protein.	0.565
V4A814_LOTGI	V3ZVW9_LOTGI	V4A814	V3ZVW9	Uncharacterized protein.	Uncharacterized protein.	0.416
V4A814_LOTGI	V4AC86_LOTGI	V4A814	V4AC86	Uncharacterized protein.	GOLD domain-containing protein.	0.559
V4A814_LOTGI	V4AJE4_LOTGI	V4A814	V4AJE4	Uncharacterized protein.	Ncstrn_small domain-containing protein.	0.998
V4A814_LOTGI	V4AKW6_LOTGI	V4A814	V4AKW6	Uncharacterized protein.	Uncharacterized protein.	0.997
V4A814_LOTGI	V4B908_LOTGI	V4A814	V4B908	Uncharacterized protein.	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.996
V4A814_LOTGI	V4BGJ2_LOTGI	V4A814	V4BGJ2	Uncharacterized protein.	Uncharacterized protein.	0.903
V4AC86_LOTGI	V4A814_LOTGI	V4AC86	V4A814	GOLD domain-containing protein.	Uncharacterized protein.	0.559
V4AC86_LOTGI	V4AJE4_LOTGI	V4AC86	V4AJE4	GOLD domain-containing protein.	Ncstrn_small domain-containing protein.	0.645
V4AC86_LOTGI	V4AKW6_LOTGI	V4AC86	V4AKW6	GOLD domain-containing protein.	Uncharacterized protein.	0.470
V4AJE4_LOTGI	V3ZBV4_LOTGI	V4AJE4	V3ZBV4	Ncstrn_small domain-containing protein.	A4_EXTRA domain-containing protein.	0.501
V4AJE4_LOTGI	V3ZVW9_LOTGI	V4AJE4	V3ZVW9	Ncstrn_small domain-containing protein.	Uncharacterized protein.	0.559
V4AJE4_LOTGI	V4A0F8_LOTGI	V4AJE4	V4A0F8	Ncstrn_small domain-containing protein.	PID domain-containing protein.	0.635