STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V4AKM8_LOTGIzf-SCNM1 domain-containing protein. (75 aa)    
Predicted Functional Partners:
V4ABY7_LOTGI
Uncharacterized protein.
    
 
 0.829
V4AN24_LOTGI
CPSF_A domain-containing protein.
    
   0.819
V4AGK6_LOTGI
TOG domain-containing protein.
    
   0.816
V4B642_LOTGI
Uncharacterized protein.
   
   0.766
V4BU53_LOTGI
Uncharacterized protein.
    
   0.761
V3Z5H2_LOTGI
RRM domain-containing protein.
    
   0.695
V3ZFZ4_LOTGI
Small nuclear ribonucleoprotein Sm D2.
    
 
 0.578
V4AG60_LOTGI
PSP domain-containing protein.
    
   0.575
V4B8V2_LOTGI
PROCN domain-containing protein.
    
   0.575
V4BRQ4_LOTGI
MPN domain-containing protein.
    
   0.575
Your Current Organism:
Lottia gigantea
NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.