STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V4AP20_LOTGIUbiquitinyl hydrolase 1. (448 aa)    
Predicted Functional Partners:
V4A4X1_LOTGI
Uncharacterized protein.
 
     0.933
V4A4U1_LOTGI
Uncharacterized protein.
   
 
 0.629
V4AFT1_LOTGI
Tyrosine--tRNA ligase.
      
 0.615
V4AML6_LOTGI
CYTOSOL_AP domain-containing protein.
    
 0.603
V4AVM5_LOTGI
Uncharacterized protein.
    
 0.603
V4AWH6_LOTGI
AAA domain-containing protein.
    
 0.537
V4BV65_LOTGI
Arrestin_C domain-containing protein.
    
 0.523
V4A671_LOTGI
Uncharacterized protein.
   
 0.520
V4A7Q3_LOTGI
Uncharacterized protein.
   
 
 0.502
V3ZF77_LOTGI
Uncharacterized protein.
   
 
 0.484
Your Current Organism:
Lottia gigantea
NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.