STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V4ASK5_LOTGISAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (427 aa)    
Predicted Functional Partners:
V4A0D1_LOTGI
Uncharacterized protein.
   
 
 0.983
V3ZY65_LOTGI
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.
   
 
 0.980
V3Z4Y4_LOTGI
RNA helicase.
   
 
 0.979
V4CP41_LOTGI
Uncharacterized protein.
  
 
 0.979
V4A581_LOTGI
RRM domain-containing protein.
   
 
 0.978
V4C0F3_LOTGI
Brix domain-containing protein.
   
 
 0.972
V4B5D8_LOTGI
60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.
  
 
 0.971
V3ZF12_LOTGI
Brix domain-containing protein.
   
 
 0.968
V4AY99_LOTGI
Uncharacterized protein.
   
 
 0.968
V4A9E4_LOTGI
TRASH domain-containing protein.
   
 
 0.967
Your Current Organism:
Lottia gigantea
NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.