Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
MCM7 | V4ASX1_LOTGI | V3ZXA6 | V4ASX1 | DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] | Uncharacterized protein. | 0.475 |
V3ZLJ8_LOTGI | V4ASX1_LOTGI | V3ZLJ8 | V4ASX1 | Uncharacterized protein. | Uncharacterized protein. | 0.468 |
V3ZLJ8_LOTGI | V4B116_LOTGI | V3ZLJ8 | V4B116 | Uncharacterized protein. | Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family. | 0.714 |
V4A175_LOTGI | V4ASX1_LOTGI | V4A175 | V4ASX1 | Uncharacterized protein. | Uncharacterized protein. | 0.550 |
V4A175_LOTGI | V4B116_LOTGI | V4A175 | V4B116 | Uncharacterized protein. | Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family. | 0.539 |
V4A175_LOTGI | V4B947_LOTGI | V4A175 | V4B947 | Uncharacterized protein. | Uncharacterized protein. | 0.686 |
V4ACP8_LOTGI | V4ASX1_LOTGI | V4ACP8 | V4ASX1 | Uncharacterized protein. | Uncharacterized protein. | 0.636 |
V4ACP8_LOTGI | V4BCR7_LOTGI | V4ACP8 | V4BCR7 | Uncharacterized protein. | UBA domain-containing protein. | 0.597 |
V4AGG2_LOTGI | V4ARX6_LOTGI | V4AGG2 | V4ARX6 | P4Hc domain-containing protein. | RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. | 0.403 |
V4AGG2_LOTGI | V4ASX1_LOTGI | V4AGG2 | V4ASX1 | P4Hc domain-containing protein. | Uncharacterized protein. | 0.540 |
V4ARX6_LOTGI | V4AGG2_LOTGI | V4ARX6 | V4AGG2 | RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. | P4Hc domain-containing protein. | 0.403 |
V4ARX6_LOTGI | V4ASX1_LOTGI | V4ARX6 | V4ASX1 | RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. | Uncharacterized protein. | 0.560 |
V4ASX1_LOTGI | MCM7 | V4ASX1 | V3ZXA6 | Uncharacterized protein. | DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] | 0.475 |
V4ASX1_LOTGI | V3ZLJ8_LOTGI | V4ASX1 | V3ZLJ8 | Uncharacterized protein. | Uncharacterized protein. | 0.468 |
V4ASX1_LOTGI | V4A175_LOTGI | V4ASX1 | V4A175 | Uncharacterized protein. | Uncharacterized protein. | 0.550 |
V4ASX1_LOTGI | V4ACP8_LOTGI | V4ASX1 | V4ACP8 | Uncharacterized protein. | Uncharacterized protein. | 0.636 |
V4ASX1_LOTGI | V4AGG2_LOTGI | V4ASX1 | V4AGG2 | Uncharacterized protein. | P4Hc domain-containing protein. | 0.540 |
V4ASX1_LOTGI | V4ARX6_LOTGI | V4ASX1 | V4ARX6 | Uncharacterized protein. | RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. | 0.560 |
V4ASX1_LOTGI | V4AT67_LOTGI | V4ASX1 | V4AT67 | Uncharacterized protein. | USP domain-containing protein; Belongs to the peptidase C19 family. | 0.663 |
V4ASX1_LOTGI | V4B116_LOTGI | V4ASX1 | V4B116 | Uncharacterized protein. | Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family. | 0.535 |
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