V4AXY6_LOTGI protein (Lottia gigantea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V4AXY6_LOTGI

Deacetylase sirtuin-type domain-containing protein. (275 aa)

Predicted Functional Partners:

V4A196_LOTGI

0.935

V4C5J9_LOTGI

0.922

V3ZZS3_LOTGI

0.916

V4BLM9_LOTGI

0.912

V3YW72_LOTGI

0.906

V4AEM1_LOTGI

0.906

V3ZYD3_LOTGI

0.900

V3ZZD5_LOTGI

0.900

V4AMV5_LOTGI

0.900

V4ASG1_LOTGI

0.821

Your Current Organism:

Lottia gigantea

NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V3YW72_LOTGI	V3ZZD5_LOTGI	V3YW72	V3ZZD5	Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.	Uncharacterized protein.	0.900
V3YW72_LOTGI	V3ZZS3_LOTGI	V3YW72	V3ZZS3	Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.	Uncharacterized protein.	0.910
V3YW72_LOTGI	V4AEM1_LOTGI	V3YW72	V4AEM1	Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.	Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.	0.902
V3YW72_LOTGI	V4AMV5_LOTGI	V3YW72	V4AMV5	Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.	Uncharacterized protein.	0.900
V3YW72_LOTGI	V4AXY6_LOTGI	V3YW72	V4AXY6	Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.	Deacetylase sirtuin-type domain-containing protein.	0.906
V3YW72_LOTGI	V4C5J9_LOTGI	V3YW72	V4C5J9	Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.	Nicotinamide-nucleotide adenylyltransferase.	0.647
V3ZYD3_LOTGI	V3ZZD5_LOTGI	V3ZYD3	V3ZZD5	Uncharacterized protein.	Uncharacterized protein.	0.900
V3ZYD3_LOTGI	V4A196_LOTGI	V3ZYD3	V4A196	Uncharacterized protein.	Glutamine-dependent NAD(+) synthetase; In the C-terminal section; belongs to the NAD synthetase family.	0.905
V3ZYD3_LOTGI	V4AMV5_LOTGI	V3ZYD3	V4AMV5	Uncharacterized protein.	Uncharacterized protein.	0.900
V3ZYD3_LOTGI	V4AXY6_LOTGI	V3ZYD3	V4AXY6	Uncharacterized protein.	Deacetylase sirtuin-type domain-containing protein.	0.900
V3ZYD3_LOTGI	V4BLM9_LOTGI	V3ZYD3	V4BLM9	Uncharacterized protein.	Uncharacterized protein.	0.902
V3ZYD3_LOTGI	V4C5J9_LOTGI	V3ZYD3	V4C5J9	Uncharacterized protein.	Nicotinamide-nucleotide adenylyltransferase.	0.911
V3ZZD5_LOTGI	V3YW72_LOTGI	V3ZZD5	V3YW72	Uncharacterized protein.	Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.	0.900
V3ZZD5_LOTGI	V3ZYD3_LOTGI	V3ZZD5	V3ZYD3	Uncharacterized protein.	Uncharacterized protein.	0.900
V3ZZD5_LOTGI	V3ZZS3_LOTGI	V3ZZD5	V3ZZS3	Uncharacterized protein.	Uncharacterized protein.	0.903
V3ZZD5_LOTGI	V4A196_LOTGI	V3ZZD5	V4A196	Uncharacterized protein.	Glutamine-dependent NAD(+) synthetase; In the C-terminal section; belongs to the NAD synthetase family.	0.900
V3ZZD5_LOTGI	V4AEM1_LOTGI	V3ZZD5	V4AEM1	Uncharacterized protein.	Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.	0.900
V3ZZD5_LOTGI	V4AMV5_LOTGI	V3ZZD5	V4AMV5	Uncharacterized protein.	Uncharacterized protein.	0.909
V3ZZD5_LOTGI	V4AXY6_LOTGI	V3ZZD5	V4AXY6	Uncharacterized protein.	Deacetylase sirtuin-type domain-containing protein.	0.900
V3ZZD5_LOTGI	V4BLM9_LOTGI	V3ZZD5	V4BLM9	Uncharacterized protein.	Uncharacterized protein.	0.900