STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V4AYT1_LOTGIUncharacterized protein. (544 aa)    
Predicted Functional Partners:
V4ARL8_LOTGI
Uncharacterized protein; Belongs to the SKP1 family.
    
 0.849
V4BYN6_LOTGI
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.686
V4C8B8_LOTGI
CPSF_A domain-containing protein.
    
 
 0.589
V4CL01_LOTGI
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
    
 
 0.585
V4AYZ2_LOTGI
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.543
V3ZVU6_LOTGI
RING-type domain-containing protein.
    
 0.530
V4B2P1_LOTGI
Ubiquitin-like domain-containing protein.
    
  0.517
V4AM46_LOTGI
Uncharacterized protein.
  
  
 
0.449
V4BC89_LOTGI
Cullin domain-containing protein; Belongs to the cullin family.
    
 0.440
V4BHI4_LOTGI
Uncharacterized protein.
  
  
 
0.412
Your Current Organism:
Lottia gigantea
NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet
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