STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V4B0G8_LOTGIUncharacterized protein; Belongs to the DEAD box helicase family. (548 aa)    
Predicted Functional Partners:
V4AM05_LOTGI
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
 0.809
V4BUA2_LOTGI
Uncharacterized protein.
   
 0.747
V4AZI7_LOTGI
RRM domain-containing protein.
   
 0.731
V4A0D1_LOTGI
Uncharacterized protein.
   
 0.712
V4AGK6_LOTGI
TOG domain-containing protein.
   
 0.707
V4B229_LOTGI
Uncharacterized protein; Belongs to the DEAD box helicase family.
  
0.693
V4AVY2_LOTGI
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.
   
 0.687
V4AHG7_LOTGI
Nop domain-containing protein.
  
 
 0.678
V4B2P9_LOTGI
Uncharacterized protein.
    
 0.666
V4AFB6_LOTGI
Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family.
   
 
 0.663
Your Current Organism:
Lottia gigantea
NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet
Server load: low (24%) [HD]