V4B2N5_LOTGI protein (Lottia gigantea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V4B2N5_LOTGI

Uncharacterized protein. (428 aa)

Predicted Functional Partners:

V3ZH37_LOTGI

0.998

V3ZI91_LOTGI

0.998

V3ZZT8_LOTGI

0.998

V4CAL6_LOTGI

0.998

V4CF76_LOTGI

0.958

V4B0S7_LOTGI

0.918

V4CKY9_LOTGI

0.910

V4BAY5_LOTGI

0.547

V4BHM1_LOTGI

0.546

V3ZI46_LOTGI

0.535

Your Current Organism:

Lottia gigantea

NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V3ZH37_LOTGI	V3ZI91_LOTGI	V3ZH37	V3ZI91	Uncharacterized protein.	Uncharacterized protein.	0.999
V3ZH37_LOTGI	V3ZZT8_LOTGI	V3ZH37	V3ZZT8	Uncharacterized protein.	Uncharacterized protein.	0.999
V3ZH37_LOTGI	V4B0S7_LOTGI	V3ZH37	V4B0S7	Uncharacterized protein.	GPI inositol-deacylase; Involved in inositol deacylation of GPI-anchored proteins which plays important roles in the quality control and ER-associated degradation of GPI-anchored proteins.	0.940
V3ZH37_LOTGI	V4B2N5_LOTGI	V3ZH37	V4B2N5	Uncharacterized protein.	Uncharacterized protein.	0.998
V3ZH37_LOTGI	V4BAY5_LOTGI	V3ZH37	V4BAY5	Uncharacterized protein.	GPI mannosyltransferase 2; Mannosyltransferase involved in glycosylphosphatidylinositol- anchor biosynthesis.	0.490
V3ZH37_LOTGI	V4BHM1_LOTGI	V3ZH37	V4BHM1	Uncharacterized protein.	Mannosyltransferase.	0.620
V3ZH37_LOTGI	V4CAL6_LOTGI	V3ZH37	V4CAL6	Uncharacterized protein.	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	0.999
V3ZH37_LOTGI	V4CF76_LOTGI	V3ZH37	V4CF76	Uncharacterized protein.	Uncharacterized protein.	0.954
V3ZH37_LOTGI	V4CKY9_LOTGI	V3ZH37	V4CKY9	Uncharacterized protein.	Uncharacterized protein.	0.922
V3ZI46_LOTGI	V3ZI91_LOTGI	V3ZI46	V3ZI91	Uncharacterized protein.	Uncharacterized protein.	0.597
V3ZI46_LOTGI	V3ZZT8_LOTGI	V3ZI46	V3ZZT8	Uncharacterized protein.	Uncharacterized protein.	0.412
V3ZI46_LOTGI	V4B2N5_LOTGI	V3ZI46	V4B2N5	Uncharacterized protein.	Uncharacterized protein.	0.535
V3ZI46_LOTGI	V4BAY5_LOTGI	V3ZI46	V4BAY5	Uncharacterized protein.	GPI mannosyltransferase 2; Mannosyltransferase involved in glycosylphosphatidylinositol- anchor biosynthesis.	0.624
V3ZI46_LOTGI	V4CAL6_LOTGI	V3ZI46	V4CAL6	Uncharacterized protein.	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	0.540
V3ZI46_LOTGI	V4CF76_LOTGI	V3ZI46	V4CF76	Uncharacterized protein.	Uncharacterized protein.	0.549
V3ZI91_LOTGI	V3ZH37_LOTGI	V3ZI91	V3ZH37	Uncharacterized protein.	Uncharacterized protein.	0.999
V3ZI91_LOTGI	V3ZI46_LOTGI	V3ZI91	V3ZI46	Uncharacterized protein.	Uncharacterized protein.	0.597
V3ZI91_LOTGI	V3ZZT8_LOTGI	V3ZI91	V3ZZT8	Uncharacterized protein.	Uncharacterized protein.	0.999
V3ZI91_LOTGI	V4B0S7_LOTGI	V3ZI91	V4B0S7	Uncharacterized protein.	GPI inositol-deacylase; Involved in inositol deacylation of GPI-anchored proteins which plays important roles in the quality control and ER-associated degradation of GPI-anchored proteins.	0.945
V3ZI91_LOTGI	V4B2N5_LOTGI	V3ZI91	V4B2N5	Uncharacterized protein.	Uncharacterized protein.	0.998