STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V4B2Y4_LOTGIUncharacterized protein. (540 aa)    
Predicted Functional Partners:
V3ZHJ6_LOTGI
Uncharacterized protein.
   
 0.969
V4AW24_LOTGI
tRNA-splicing endonuclease subunit Sen2; Constitutes one of the two catalytic subunit of the tRNA- splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural [...]
    
   0.923
V4BKW3_LOTGI
Uncharacterized protein.
   
 0.874
V4BCS0_LOTGI
Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 
 0.851
V4AGT7_LOTGI
Uncharacterized protein.
    
 0.830
V4CM86_LOTGI
SH3 domain-containing protein.
    
 
 0.768
V4AFU0_LOTGI
F-BAR domain-containing protein.
    
0.694
V4AVL2_LOTGI
Uncharacterized protein.
    
 0.673
V3ZQ94_LOTGI
Uncharacterized protein.
    
 0.653
V4A4Y5_LOTGI
Uncharacterized protein.
    
 0.653
Your Current Organism:
Lottia gigantea
NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.