STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V4B6C3_LOTGIUncharacterized protein. (97 aa)    
Predicted Functional Partners:
V3ZX92_LOTGI
Uncharacterized protein.
   
 
 0.581
V4AGY7_LOTGI
SEA domain-containing protein.
   
 
 0.570
V4BFD7_LOTGI
Uncharacterized protein.
   
  
 0.569
V3ZN44_LOTGI
RanGAP1_C domain-containing protein.
   
 
 0.553
V3ZPN6_LOTGI
Rho-GAP domain-containing protein.
   
  
 0.543
V4BX81_LOTGI
Methyltranfer_dom domain-containing protein.
      
 0.541
V3ZV42_LOTGI
Uncharacterized protein.
      
 0.540
V4A0B8_LOTGI
Coatomer subunit alpha; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network.
      
 0.540
V4A3B2_LOTGI
Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.
      
 0.540
V4C0C5_LOTGI
Rho-GAP domain-containing protein.
      
 0.540
Your Current Organism:
Lottia gigantea
NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet
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