STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V4B6J7_LOTGIUncharacterized protein. (839 aa)    
Predicted Functional Partners:
V4AJZ3_LOTGI
t-SNARE coiled-coil homology domain-containing protein.
   
 0.984
V4A2J4_LOTGI
GRASP55_65 domain-containing protein.
    
 0.964
V4C410_LOTGI
Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.
    
 0.962
V4B697_LOTGI
Uso1_p115_head domain-containing protein.
    
 0.904
V4A6W8_LOTGI
Uncharacterized protein.
    
 0.818
V4CL01_LOTGI
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
     
 0.781
V3ZRA6_LOTGI
L-type lectin-like domain-containing protein.
   
 
 0.773
V4B413_LOTGI
Uncharacterized protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.
     
 0.766
V4BMS7_LOTGI
t-SNARE coiled-coil homology domain-containing protein.
    
 0.752
V4B3C6_LOTGI
L-type lectin-like domain-containing protein.
     
 0.738
Your Current Organism:
Lottia gigantea
NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.