STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V4B828_LOTGIWAPL domain-containing protein. (410 aa)    
Predicted Functional Partners:
V4BXW2_LOTGI
Uncharacterized protein.
   
 0.991
V4CP36_LOTGI
Uncharacterized protein.
   
    0.979
V3ZYT8_LOTGI
SMC_N domain-containing protein.
   
 0.969
V3ZQP8_LOTGI
Uncharacterized protein.
    
 0.952
V4C2J1_LOTGI
Nipped-B protein.
   
 0.928
V4ANK7_LOTGI
SCD domain-containing protein.
   
 0.925
V4AFJ6_LOTGI
SMC hinge domain-containing protein.
   
 0.910
V4B4L6_LOTGI
Uncharacterized protein.
     
 0.898
V4BAB7_LOTGI
Peptidase C50 domain-containing protein.
     
 0.860
V4APZ1_LOTGI
Uncharacterized protein.
    
 0.854
Your Current Organism:
Lottia gigantea
NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.