STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V4B8C5_LOTGIUBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (167 aa)    
Predicted Functional Partners:
V4C2J8_LOTGI
Uncharacterized protein.
    
 0.964
V4BLS6_LOTGI
Uncharacterized protein.
    
 0.932
V4ARY1_LOTGI
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
    
 
 0.903
V3ZW91_LOTGI
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
  
  
 
0.901
V3ZD39_LOTGI
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
0.862
V3ZJ93_LOTGI
E3 ubiquitin protein ligase.
    
 0.853
V4B2A0_LOTGI
E3 ubiquitin protein ligase.
    
 0.853
V4CP36_LOTGI
Uncharacterized protein.
    
 0.842
V4AQE1_LOTGI
UBA_e1_C domain-containing protein; Belongs to the ubiquitin-activating E1 family.
   
 0.831
V4BZJ8_LOTGI
UBA_e1_C domain-containing protein.
   
 0.831
Your Current Organism:
Lottia gigantea
NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet
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