V4B8W5_LOTGI protein (Lottia gigantea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V4B8W5_LOTGI

WD_REPEATS_REGION domain-containing protein. (301 aa)

Predicted Functional Partners:

V4C8B8_LOTGI

0.991

V4ANR1_LOTGI

0.988

V4B982_LOTGI

0.976

V3ZVU6_LOTGI

0.944

V4B588_LOTGI

0.893

V4AF38_LOTGI

0.885

V3Z9S6_LOTGI

0.882

V4AYS8_LOTGI

0.879

V4BA89_LOTGI

0.879

V4A1X9_LOTGI

0.877

Your Current Organism:

Lottia gigantea

NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V3Z9S6_LOTGI	V4A1X9_LOTGI	V3Z9S6	V4A1X9	Uncharacterized protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.866
V3Z9S6_LOTGI	V4AF38_LOTGI	V3Z9S6	V4AF38	Uncharacterized protein.	BRCT domain-containing protein.	0.764
V3Z9S6_LOTGI	V4ANR1_LOTGI	V3Z9S6	V4ANR1	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.542
V3Z9S6_LOTGI	V4AYS8_LOTGI	V3Z9S6	V4AYS8	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.773
V3Z9S6_LOTGI	V4B588_LOTGI	V3Z9S6	V4B588	Uncharacterized protein.	Mcm10 domain-containing protein.	0.938
V3Z9S6_LOTGI	V4B8W5_LOTGI	V3Z9S6	V4B8W5	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.882
V3Z9S6_LOTGI	V4B982_LOTGI	V3Z9S6	V4B982	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.971
V3Z9S6_LOTGI	V4BA89_LOTGI	V3Z9S6	V4BA89	Uncharacterized protein.	HMG box domain-containing protein.	0.773
V3Z9S6_LOTGI	V4C8B8_LOTGI	V3Z9S6	V4C8B8	Uncharacterized protein.	CPSF_A domain-containing protein.	0.718
V3ZVU6_LOTGI	V4A1X9_LOTGI	V3ZVU6	V4A1X9	RING-type domain-containing protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.851
V3ZVU6_LOTGI	V4AF38_LOTGI	V3ZVU6	V4AF38	RING-type domain-containing protein.	BRCT domain-containing protein.	0.699
V3ZVU6_LOTGI	V4ANR1_LOTGI	V3ZVU6	V4ANR1	RING-type domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.988
V3ZVU6_LOTGI	V4B8W5_LOTGI	V3ZVU6	V4B8W5	RING-type domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.944
V3ZVU6_LOTGI	V4B982_LOTGI	V3ZVU6	V4B982	RING-type domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.719
V3ZVU6_LOTGI	V4C8B8_LOTGI	V3ZVU6	V4C8B8	RING-type domain-containing protein.	CPSF_A domain-containing protein.	0.991
V4A1X9_LOTGI	V3Z9S6_LOTGI	V4A1X9	V3Z9S6	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	Uncharacterized protein.	0.866
V4A1X9_LOTGI	V3ZVU6_LOTGI	V4A1X9	V3ZVU6	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	RING-type domain-containing protein.	0.851
V4A1X9_LOTGI	V4AF38_LOTGI	V4A1X9	V4AF38	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	BRCT domain-containing protein.	0.923
V4A1X9_LOTGI	V4ANR1_LOTGI	V4A1X9	V4ANR1	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.771
V4A1X9_LOTGI	V4AYS8_LOTGI	V4A1X9	V4AYS8	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	WD_REPEATS_REGION domain-containing protein.	0.954