STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V4BHE9_LOTGIPOU domain protein. (184 aa)    
Predicted Functional Partners:
V4ALB6_LOTGI
Uncharacterized protein.
    
  0.586
V4AYP6_LOTGI
TFIIB-type domain-containing protein.
    
 0.568
V4AG96_LOTGI
Uncharacterized protein.
   
 
  0.546
V4BKR8_LOTGI
HTH TFE/IIEalpha-type domain-containing protein.
    
  0.538
V4B3H1_LOTGI
Uncharacterized protein.
     
 0.504
V4AJQ2_LOTGI
Uncharacterized protein.
    
 0.471
V4AA50_LOTGI
Uncharacterized protein.
      
 0.469
V3ZXQ0_LOTGI
Homeobox domain-containing protein.
   
 0.453
V3ZTQ1_LOTGI
Uncharacterized protein.
     
 0.434
V3ZM03_LOTGI
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
     
 0.423
Your Current Organism:
Lottia gigantea
NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet
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