STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V4BPV2_LOTGIPHD-type domain-containing protein. (50 aa)    
Predicted Functional Partners:
V4ANE5_LOTGI
HDAC_interact domain-containing protein.
   
 
 0.844
V4AIZ9_LOTGI
Uncharacterized protein.
    
 
 0.838
V4BKR5_LOTGI
WD_REPEATS_REGION domain-containing protein.
   
 0.820
V4B9S7_LOTGI
Uncharacterized protein.
    
 0.749
V4A204_LOTGI
Hist_deacetyl domain-containing protein.
    
 0.669
V4A783_LOTGI
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.669
V4ABY9_LOTGI
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.669
V4AN75_LOTGI
Uncharacterized protein.
    
 0.644
V3ZZZ4_LOTGI
Uncharacterized protein.
   
 0.640
V3Z9R2_LOTGI
Enhancer of polycomb-like protein.
    
 0.614
Your Current Organism:
Lottia gigantea
NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.