STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V4BU21_LOTGIPeptidylprolyl isomerase. (161 aa)    
Predicted Functional Partners:
V4AJZ3_LOTGI
t-SNARE coiled-coil homology domain-containing protein.
   
 0.622
V4A2J4_LOTGI
GRASP55_65 domain-containing protein.
    
 0.509
V4B697_LOTGI
Uso1_p115_head domain-containing protein.
   
 0.480
V4C7T6_LOTGI
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
   
 
 0.446
V4ALW6_LOTGI
Uncharacterized protein.
    
 0.441
V4C410_LOTGI
Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.
    
 0.441
V4BMD9_LOTGI
Rab-GAP TBC domain-containing protein.
   
  
 0.423
V3ZMM8_LOTGI
Uncharacterized protein.
     
 0.416
V4AEM3_LOTGI
F-box domain-containing protein.
   
  
 0.401
Your Current Organism:
Lottia gigantea
NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet
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