STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V4C7G1_LOTGIMatrin-type domain-containing protein. (88 aa)    
Predicted Functional Partners:
V3ZFZ4_LOTGI
Small nuclear ribonucleoprotein Sm D2.
   
 0.997
V4C871_LOTGI
Small nuclear ribonucleoprotein Sm D3.
   
 0.994
V4APZ5_LOTGI
Small nuclear ribonucleoprotein G.
   
 0.993
V4A5M0_LOTGI
Uncharacterized protein.
   
 
 0.992
V4ABC3_LOTGI
LRRcap domain-containing protein.
   
 
 0.991
V4ATJ2_LOTGI
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.990
V4BQV0_LOTGI
Sm domain-containing protein.
   
 0.988
V4A4Z3_LOTGI
Uncharacterized protein.
   
 0.987
V4AYM7_LOTGI
Nuclear cap-binding protein subunit 2.
    
 
 0.984
V3ZR19_LOTGI
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.977
Your Current Organism:
Lottia gigantea
NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.