STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V4CDK5_LOTGIHelicase ATP-binding domain-containing protein. (674 aa)    
Predicted Functional Partners:
V4BAV0_LOTGI
Uncharacterized protein.
   
 0.851
V3ZRI6_LOTGI
Uncharacterized protein.
    
 0.839
V4B2E9_LOTGI
General transcription factor IIH subunit.
    
 0.839
V4ART5_LOTGI
RING-type domain-containing protein.
    
 0.837
V4A0H2_LOTGI
Uncharacterized protein.
    
 0.836
V3ZW01_LOTGI
General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.831
V3ZTQ1_LOTGI
Uncharacterized protein.
    
   0.825
V3ZQF2_LOTGI
CYCLIN domain-containing protein; Belongs to the cyclin family.
    
 0.807
V4BKR8_LOTGI
HTH TFE/IIEalpha-type domain-containing protein.
   
 0.806
V3ZAX8_LOTGI
ANK_REP_REGION domain-containing protein.
   
 0.800
Your Current Organism:
Lottia gigantea
NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet
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