STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V4CKZ7_LOTGISplicing factor 3B subunit 5; Belongs to the SF3B5 family. (85 aa)    
Predicted Functional Partners:
V3Z5H2_LOTGI
RRM domain-containing protein.
   
 0.999
V4AGK6_LOTGI
TOG domain-containing protein.
    
 0.999
V4AN24_LOTGI
CPSF_A domain-containing protein.
   
 0.999
V4AQK2_LOTGI
Uncharacterized protein.
   
 0.999
V4BKI2_LOTGI
Uncharacterized protein.
   
 0.999
V4AG60_LOTGI
PSP domain-containing protein.
    
 0.996
V4AZQ5_LOTGI
Uncharacterized protein.
    
 0.996
V3ZQC5_LOTGI
Matrin-type domain-containing protein.
   
 0.995
V3ZXU2_LOTGI
Uncharacterized protein.
    
 0.994
V3ZN68_LOTGI
Matrin-type domain-containing protein.
   
 0.992
Your Current Organism:
Lottia gigantea
NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.