SJZ41802.1 protein (Enhydrobacter aerosaccus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SJZ41802.1

ATP-binding cassette, subfamily B. (584 aa)

Predicted Functional Partners:

SKA25916.1

0.941

SKA18499.1

0.849

SKA25797.1

0.848

SJZ58469.1

0.833

SJZ41761.1

0.826

SKA35267.1

0.819

SJZ32772.1

0.687

SJZ38139.1

0.630

SKA22387.1

0.612

SKA15273.1

0.579

Your Current Organism:

Enhydrobacter aerosaccus

NCBI taxonomy Id: 225324
Other names: ATCC 27094, CCUG 58314, DSM 8914, E. aerosaccus, NCIMB 12535

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SJZ32772.1	SJZ41802.1	SAMN02745126_00385	SAMN02745126_00971	Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.	ATP-binding cassette, subfamily B.	0.687
SJZ32772.1	SKA22387.1	SAMN02745126_00385	SAMN02745126_04308	Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.	Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family.	0.642
SJZ32772.1	SKA25916.1	SAMN02745126_00385	SAMN02745126_04581	Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.	Acyl transferase domain-containing protein.	0.999
SJZ38139.1	SJZ41802.1	SAMN02745126_00767	SAMN02745126_00971	Peptide/nickel transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	ATP-binding cassette, subfamily B.	0.630
SJZ41761.1	SJZ41802.1	SAMN02745126_00970	SAMN02745126_00971	Frataxin; Involved in iron-sulfur (Fe-S) cluster assembly. May act as a regulator of Fe-S biogenesis.	ATP-binding cassette, subfamily B.	0.826
SJZ41761.1	SKA35267.1	SAMN02745126_00970	SAMN02745126_05671	Frataxin; Involved in iron-sulfur (Fe-S) cluster assembly. May act as a regulator of Fe-S biogenesis.	ATP-binding cassette, subfamily B.	0.521
SJZ41802.1	SJZ32772.1	SAMN02745126_00971	SAMN02745126_00385	ATP-binding cassette, subfamily B.	Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.	0.687
SJZ41802.1	SJZ38139.1	SAMN02745126_00971	SAMN02745126_00767	ATP-binding cassette, subfamily B.	Peptide/nickel transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.630
SJZ41802.1	SJZ41761.1	SAMN02745126_00971	SAMN02745126_00970	ATP-binding cassette, subfamily B.	Frataxin; Involved in iron-sulfur (Fe-S) cluster assembly. May act as a regulator of Fe-S biogenesis.	0.826
SJZ41802.1	SJZ58469.1	SAMN02745126_00971	SAMN02745126_01733	ATP-binding cassette, subfamily B.	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	0.833
SJZ41802.1	SKA15273.1	SAMN02745126_00971	SAMN02745126_03782	ATP-binding cassette, subfamily B.	phospholipid/cholesterol/gamma-HCH transport system permease protein.	0.579
SJZ41802.1	SKA18499.1	SAMN02745126_00971	SAMN02745126_04050	ATP-binding cassette, subfamily B.	ATP-binding cassette, subfamily B, HlyB/CyaB.	0.849
SJZ41802.1	SKA22387.1	SAMN02745126_00971	SAMN02745126_04308	ATP-binding cassette, subfamily B.	Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family.	0.612
SJZ41802.1	SKA25797.1	SAMN02745126_00971	SAMN02745126_04570	ATP-binding cassette, subfamily B.	ATP-binding cassette, subfamily B, HlyB/CyaB.	0.848
SJZ41802.1	SKA25916.1	SAMN02745126_00971	SAMN02745126_04581	ATP-binding cassette, subfamily B.	Acyl transferase domain-containing protein.	0.941
SJZ41802.1	SKA35267.1	SAMN02745126_00971	SAMN02745126_05671	ATP-binding cassette, subfamily B.	ATP-binding cassette, subfamily B.	0.819
SJZ58469.1	SJZ41802.1	SAMN02745126_01733	SAMN02745126_00971	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	ATP-binding cassette, subfamily B.	0.833
SJZ58469.1	SKA25916.1	SAMN02745126_01733	SAMN02745126_04581	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.	Acyl transferase domain-containing protein.	0.545
SKA15273.1	SJZ41802.1	SAMN02745126_03782	SAMN02745126_00971	phospholipid/cholesterol/gamma-HCH transport system permease protein.	ATP-binding cassette, subfamily B.	0.579
SKA18499.1	SJZ41802.1	SAMN02745126_04050	SAMN02745126_00971	ATP-binding cassette, subfamily B, HlyB/CyaB.	ATP-binding cassette, subfamily B.	0.849