SJZ78055.1 protein (Enhydrobacter aerosaccus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SJZ78055.1

TRAP transporter, 4TM/12TM fusion protein. (867 aa)

Predicted Functional Partners:

SJZ78077.1

0.995

SJZ50764.1

0.973

SKA11320.1

0.957

SKA02885.1

0.834

SKA41066.1

0.808

SKA02835.1

0.769

SJZ82173.1

0.759

SKA34085.1

0.757

SKA02866.1

0.744

SJZ36296.1

0.743

Your Current Organism:

Enhydrobacter aerosaccus

NCBI taxonomy Id: 225324
Other names: ATCC 27094, CCUG 58314, DSM 8914, E. aerosaccus, NCIMB 12535

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SJZ36296.1	SJZ50764.1	SAMN02745126_00652	SAMN02745126_01401	TRAP-type C4-dicarboxylate transport system, substrate-binding protein.	Hypothetical protein.	0.471
SJZ36296.1	SJZ78055.1	SAMN02745126_00652	SAMN02745126_02266	TRAP-type C4-dicarboxylate transport system, substrate-binding protein.	TRAP transporter, 4TM/12TM fusion protein.	0.743
SJZ36296.1	SJZ78077.1	SAMN02745126_00652	SAMN02745126_02267	TRAP-type C4-dicarboxylate transport system, substrate-binding protein.	Hypothetical protein.	0.631
SJZ36296.1	SJZ82173.1	SAMN02745126_00652	SAMN02745126_02429	TRAP-type C4-dicarboxylate transport system, substrate-binding protein.	TRAP-type C4-dicarboxylate transport system, substrate-binding protein.	0.662
SJZ36296.1	SKA02835.1	SAMN02745126_00652	SAMN02745126_03214	TRAP-type C4-dicarboxylate transport system, substrate-binding protein.	Extracellular solute-binding protein, family 7.	0.700
SJZ36296.1	SKA02866.1	SAMN02745126_00652	SAMN02745126_03215	TRAP-type C4-dicarboxylate transport system, substrate-binding protein.	TRAP-type C4-dicarboxylate transport system, small permease component.	0.815
SJZ36296.1	SKA02885.1	SAMN02745126_00652	SAMN02745126_03216	TRAP-type C4-dicarboxylate transport system, substrate-binding protein.	C4-dicarboxylate transporter, DctM subunit.	0.776
SJZ36296.1	SKA11320.1	SAMN02745126_00652	SAMN02745126_03609	TRAP-type C4-dicarboxylate transport system, substrate-binding protein.	Hypothetical protein.	0.567
SJZ36296.1	SKA34085.1	SAMN02745126_00652	SAMN02745126_05473	TRAP-type C4-dicarboxylate transport system, substrate-binding protein.	Tripartite ATP-independent transporter solute receptor, DctP family.	0.649
SJZ36296.1	SKA41066.1	SAMN02745126_00652	SAMN02745126_06464	TRAP-type C4-dicarboxylate transport system, substrate-binding protein.	TRAP transporter, DctM subunit.	0.797
SJZ50764.1	SJZ36296.1	SAMN02745126_01401	SAMN02745126_00652	Hypothetical protein.	TRAP-type C4-dicarboxylate transport system, substrate-binding protein.	0.471
SJZ50764.1	SJZ78055.1	SAMN02745126_01401	SAMN02745126_02266	Hypothetical protein.	TRAP transporter, 4TM/12TM fusion protein.	0.973
SJZ50764.1	SJZ82173.1	SAMN02745126_01401	SAMN02745126_02429	Hypothetical protein.	TRAP-type C4-dicarboxylate transport system, substrate-binding protein.	0.726
SJZ50764.1	SKA02835.1	SAMN02745126_01401	SAMN02745126_03214	Hypothetical protein.	Extracellular solute-binding protein, family 7.	0.744
SJZ50764.1	SKA02866.1	SAMN02745126_01401	SAMN02745126_03215	Hypothetical protein.	TRAP-type C4-dicarboxylate transport system, small permease component.	0.572
SJZ50764.1	SKA02885.1	SAMN02745126_01401	SAMN02745126_03216	Hypothetical protein.	C4-dicarboxylate transporter, DctM subunit.	0.763
SJZ50764.1	SKA11320.1	SAMN02745126_01401	SAMN02745126_03609	Hypothetical protein.	Hypothetical protein.	0.754
SJZ50764.1	SKA34085.1	SAMN02745126_01401	SAMN02745126_05473	Hypothetical protein.	Tripartite ATP-independent transporter solute receptor, DctP family.	0.723
SJZ50764.1	SKA41066.1	SAMN02745126_01401	SAMN02745126_06464	Hypothetical protein.	TRAP transporter, DctM subunit.	0.756
SJZ78055.1	SJZ36296.1	SAMN02745126_02266	SAMN02745126_00652	TRAP transporter, 4TM/12TM fusion protein.	TRAP-type C4-dicarboxylate transport system, substrate-binding protein.	0.743