STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA28742.1DNA-binding transcriptional regulator, MerR family. (131 aa)    
Predicted Functional Partners:
SKA37049.1
Signal transduction histidine kinase.
   
 0.812
SKA06105.1
Signal transduction histidine kinase.
   
 0.810
SKA30798.1
PAS domain S-box-containing protein.
   
 0.807
SJZ41668.1
MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR.
  
   
 0.775
SJZ32688.1
Glutamate synthase (NADH) large subunit.
     
 0.769
SJZ92193.1
Glutamate synthase (NADPH/NADH) large chain.
     
 0.769
SKA21035.1
DNA-binding transcriptional regulator, MerR family.
  
     0.741
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.725
SKA34350.1
methylmalonyl-CoA mutase.
     
 0.676
SKA35546.1
(R)-ethylmalonyl-CoA mutase.
     
 0.676
Your Current Organism:
Enhydrobacter aerosaccus
NCBI taxonomy Id: 225324
Other names: ATCC 27094, CCUG 58314, DSM 8914, E. aerosaccus, NCIMB 12535
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