STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA40852.1Magnesium chelatase family protein. (539 aa)    
Predicted Functional Partners:
SJZ43622.1
DNA processing protein.
 
 0.915
SKA35120.1
comF family protein.
 
  
 0.828
SJZ47532.1
Competence protein ComEC.
 
  
 0.785
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
     0.782
ruvC
Holliday junction endonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
  
   
 0.714
SKA33773.1
Protein of unknown function.
   
   0.641
SKA30798.1
PAS domain S-box-containing protein.
  
  
 0.560
SJZ69059.1
Signal transduction histidine kinase.
  
    0.511
SJZ33347.1
Peptidase family M23.
 
 
   0.509
SKA27750.1
Putative endonuclease; Belongs to the UPF0102 family.
 
  
 0.502
Your Current Organism:
Enhydrobacter aerosaccus
NCBI taxonomy Id: 225324
Other names: ATCC 27094, CCUG 58314, DSM 8914, E. aerosaccus, NCIMB 12535
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.