Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
OPJ66213.1Hypothetical protein. (322 aa)    
Predicted Functional Partners:
patA_1
Peptidoglycan O-acetyltransferase; Belongs to the membrane-bound acyltransferase family.
 
  
  0.929
OPJ59547.1
Cadherin-like beta sandwich domain protein.
  
 0.802
celH
Endoglucanase H precursor; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
   
 0.743
xynC
Endo-1,4-beta-xylanase C precursor.
   
 0.739
dexA
Dextranase precursor.
  
 0.711
dex
Dextranase precursor.
  
 0.711
OPJ65617.1
Hypothetical protein.
  
 0.709
pehX
Exo-poly-alpha-D-galacturonosidase precursor; Belongs to the glycosyl hydrolase 28 family.
  
 0.709
patA_2
Peptidoglycan O-acetyltransferase; Belongs to the membrane-bound acyltransferase family.
 
  
  0.604
patA_3
Peptidoglycan O-acetyltransferase; Could be involved in the transport of activated D-alanine through the membrane.
 
  
  0.547
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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