Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
macB_1Macrolide export ATP-binding/permease protein MacB. (422 aa)    
Predicted Functional Partners:
lolD_1
Lipoprotein-releasing system ATP-binding protein LolD.
 0.997
macB_6
Macrolide export ATP-binding/permease protein MacB.
 0.988
macB_4
Macrolide export ATP-binding/permease protein MacB.
 0.987
macA_1
Macrolide export protein MacA.
 
  
 0.976
lolD_2
Lipoprotein-releasing system ATP-binding protein LolD; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
 0.963
lolD_3
Lipoprotein-releasing system ATP-binding protein LolD.
 0.946
OPJ62949.1
Putative ABC transporter ATP-binding protein.
 0.937
mdtN_1
Multidrug resistance protein MdtN.
 
 
 0.930
macB_2
Macrolide export ATP-binding/permease protein MacB.
 0.922
yxdL
ABC transporter ATP-binding protein YxdL.
 0.907
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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