Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OPJ66255.1Cupin domain protein. (109 aa)    
Predicted Functional Partners:
kduI1
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase 1; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
  
 0.917
melR_3
Melibiose operon regulatory protein.
  
 0.647
melR_4
Melibiose operon regulatory protein.
  
 0.647
adaA_4
Bifunctional transcriptional activator/DNA repair enzyme AdaA.
  
 0.647
puuR_2
HTH-type transcriptional regulator PuuR.
  
 0.629
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
    
  0.570
lldR_2
Putative L-lactate dehydrogenase operon regulatory protein.
 
  
 0.534
pomA
Chemotaxis protein PomA.
    
   0.532
purB
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
   
 0.526
OPJ62815.1
Hypothetical protein.
  
 0.522
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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