Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
OPJ66048.1NADPH-dependent FMN reductase. (233 aa)    
Predicted Functional Partners:
icaR
Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR.
 
     0.870
OPJ58257.1
NADH oxidase.
  
 
 0.722
betI
HTH-type transcriptional regulator BetI.
 
     0.526
OPJ62496.1
MarR family protein.
  
    0.462
mdaB
Modulator of drug activity B.
    
 0.453
OPJ63138.1
Putative universal stress protein.
  
 
 0.421
OPJ61740.1
PrkA AAA domain protein.
   
    0.415
tkt
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
   
  
 0.401
OPJ61337.1
Isochorismatase family protein.
  
    0.401
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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