Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
xynZEndo-1,4-beta-xylanase Z precursor. (360 aa)    
Predicted Functional Partners:
fumD
Fumonisin B1 esterase; Belongs to the type-B carboxylesterase/lipase family.
 
     0.903
xynC
Endo-1,4-beta-xylanase C precursor.
 
   0.883
xynB_1
Beta-xylosidase.
 
     0.776
xynD
Arabinoxylan arabinofuranohydrolase precursor; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.753
agaA
Alpha-galactosidase A precursor.
  
  
  0.730
fruA_2
Fructan beta-fructosidase precursor.
 
 
 0.724
abf2
Intracellular exo-alpha-L-arabinofuranosidase 2.
 
  
 0.678
OPJ66067.1
Non-reducing end alpha-L-arabinofuranosidase BoGH43B precursor; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.676
xylA_1
Xylosidase/arabinosidase; Belongs to the glycosyl hydrolase 43 family.
  
   
 0.640
aguA_1
Xylan alpha-(1->2)-glucuronosidase; Belongs to the glycosyl hydrolase 67 family.
 
     0.637
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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