Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
yehU_1Sensor histidine kinase YehU. (626 aa)    
Predicted Functional Partners:
OPJ66079.1
Putative response regulatory protein.
 
 
 0.941
OPJ66077.1
Bacterial extracellular solute-binding protein.
 
     0.911
ypdB_1
Transcriptional regulatory protein YpdB.
 
 
 0.874
OPJ61346.1
Putative response regulatory protein.
 
 
 0.871
OPJ63170.1
Putative response regulatory protein.
 
 
 0.838
OPJ66069.1
Putative response regulatory protein.
 
 
 0.828
OPJ58370.1
Putative response regulatory protein.
 
 
 0.818
OPJ62218.1
Putative response regulatory protein.
 
 
 0.814
rpfC_2
Sensory/regulatory protein RpfC.
    
 0.789
OPJ60917.1
Putative response regulatory protein.
 
 
 0.786
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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