Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
agaAAlpha-galactosidase A precursor. (431 aa)    
Predicted Functional Partners:
yicI_1
Alpha-xylosidase; Belongs to the glycosyl hydrolase 31 family.
 
  
 0.895
ganA
Beta-galactosidase GanA.
 
 
 0.884
cbgA
Beta-galactosidase.
 
  
 0.868
araA_2
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
  
  0.845
mro
Aldose 1-epimerase precursor; Converts alpha-aldose to the beta-anomer.
  
 
 0.825
OPJ62512.1
Beta-galactosidase BoGH2A precursor; Belongs to the glycosyl hydrolase 2 family.
 
  
 0.821
yicI_2
Alpha-xylosidase; Belongs to the glycosyl hydrolase 31 family.
 
  
 0.802
abf2
Intracellular exo-alpha-L-arabinofuranosidase 2.
 
  
 0.783
xynC
Endo-1,4-beta-xylanase C precursor.
  
  
 0.779
rafA_1
Alpha-galactosidase.
    
 0.778
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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