Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ66093.1Hypothetical protein. (571 aa)    
Predicted Functional Partners:
OPJ59547.1
Cadherin-like beta sandwich domain protein.
  
 0.850
celH
Endoglucanase H precursor; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
 
 0.835
xynC
Endo-1,4-beta-xylanase C precursor.
 
 
 0.810
dexA
Dextranase precursor.
 
 0.807
dex
Dextranase precursor.
 
 0.803
OPJ65617.1
Hypothetical protein.
  
 0.752
pehX
Exo-poly-alpha-D-galacturonosidase precursor; Belongs to the glycosyl hydrolase 28 family.
  
 0.752
agaA
Alpha-galactosidase A precursor.
 
 
 0.741
OPJ66064.1
Reducing end xylose-releasing exo-oligoxylanase.
 
   
 0.735
OPJ66097.1
Hypothetical protein.
 
 0.729
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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