Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
OPJ66094.1Hypothetical protein. (169 aa)    
Predicted Functional Partners:
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
    
  0.833
nifJ_3
Pyruvate-flavodoxin oxidoreductase.
    
  0.833
gltB_1
Ferredoxin-dependent glutamate synthase 1.
   
 
 0.789
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
    
  0.787
pheA
P-protein.
    
  0.766
korA
2-oxoglutarate oxidoreductase subunit KorA.
  
 
  0.676
msbA_2
Lipid A export ATP-binding/permease protein MsbA.
       0.535
OPJ66096.1
Putative ABC transporter ATP-binding protein.
       0.535
OPJ60169.1
Hypothetical protein.
 
  
 0.499
yitJ
Bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase.
 
  
 0.498
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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