Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lacF_2Lactose transport system permease protein LacF. (297 aa)    
Predicted Functional Partners:
araQ_4
L-arabinose transport system permease protein AraQ.
 
 0.986
sugC_1
Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.
 
 0.966
sugC_2
Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.
 
 0.966
malG_1
Maltose transport system permease protein MalG.
 
 0.964
malG_2
Maltose transport system permease protein MalG.
 
 0.964
ugpB_1
Sn-glycerol-3-phosphate-binding periplasmic protein UgpB precursor.
 
 0.962
ugpB_2
Sn-glycerol-3-phosphate-binding periplasmic protein UgpB precursor.
 
 0.945
lacG_1
Lactose transport system permease protein LacG.
 
 0.942
araQ_12
L-arabinose transport system permease protein AraQ.
 
 0.942
araQ_13
L-arabinose transport system permease protein AraQ.
 
 0.942
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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