Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
oatAO-acetyltransferase OatA. (427 aa)    
Predicted Functional Partners:
OPJ57329.1
Hypothetical protein.
 
  
 0.659
OPJ64688.1
NMT1/THI5 like protein.
 
     0.531
OPJ60927.1
Response regulator receiver domain protein.
  
  
 0.511
pglF
UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase.
     
 0.467
tuaE
Teichuronic acid biosynthesis protein TuaE.
     
 0.462
sigW_1
ECF RNA polymerase sigma factor SigW; Belongs to the sigma-70 factor family. ECF subfamily.
  
  
 0.443
yfgF
Cyclic di-GMP phosphodiesterase YfgF.
  
  
 0.429
OPJ66117.1
Hypothetical protein.
       0.419
cph2_4
Phytochrome-like protein cph2.
  
    0.417
OPJ63889.1
Hypothetical protein.
  
     0.415
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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