Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yycG_1Sensor histidine kinase YycG. (590 aa)    
Predicted Functional Partners:
srrA_1
Transcriptional regulatory protein SrrA.
 
 0.979
srrA_3
Transcriptional regulatory protein SrrA.
 
 0.938
barA_2
Signal transduction histidine-protein kinase BarA.
 
 
0.926
phoP_3
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP.
 
 0.906
luxQ_3
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
 
0.879
luxQ_2
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
 
0.878
rpfC_1
Sensory/regulatory protein RpfC.
 
 
0.878
srrA_2
Transcriptional regulatory protein SrrA.
 
 0.870
hssR_2
Heme response regulator HssR.
 
 0.866
srrA_5
Transcriptional regulatory protein SrrA.
 
 0.863
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.