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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yycG_1Sensor histidine kinase YycG. (590 aa)    
Predicted Functional Partners:
srrA_1
Transcriptional regulatory protein SrrA.
 0.979
regX3_1
Sensory transduction protein regX3.
 0.959
srrA_3
Transcriptional regulatory protein SrrA.
 0.945
barA_2
Signal transduction histidine-protein kinase BarA.
 
 
0.930
phoP_3
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP.
 0.914
regX3_5
Sensory transduction protein regX3.
 
 0.914
srrA_2
Transcriptional regulatory protein SrrA.
 0.878
srrA_5
Transcriptional regulatory protein SrrA.
 0.872
hssR_2
Heme response regulator HssR.
 0.867
phoP_2
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP.
 
 0.866
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.