STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yccM_2Putative electron transport protein YccM. (255 aa)    
Predicted Functional Partners:
yccM_1
Putative electron transport protein YccM.
 
     0.640
OPJ65890.1
Hypothetical protein.
       0.563
OPJ65669.1
Ferredoxin.
 
 
 0.456
OPJ57410.1
Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
 
 
 0.452
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.438
nifJ_3
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.438
OPJ65888.1
Hypothetical protein.
       0.435
srrA_1
Transcriptional regulatory protein SrrA.
       0.418
yycG_1
Sensor histidine kinase YycG.
       0.415
glpE
Thiosulfate sulfurtransferase GlpE.
       0.410
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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