Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ65905.1Hypothetical protein. (341 aa)    
Predicted Functional Partners:
OPJ65285.1
Hypothetical protein.
 
  
 0.831
OPJ65906.1
Hypothetical protein.
  
  
 0.808
blaR1_3
Regulatory protein BlaR1.
    
  0.701
cwlC_3
Sporulation-specific N-acetylmuramoyl-L-alanine amidase.
  
  
  0.608
OPJ66195.1
Tetratricopeptide repeat protein.
  
     0.599
OPJ59547.1
Cadherin-like beta sandwich domain protein.
 
    0.555
spoVB_3
Stage V sporulation protein B.
 
     0.548
OPJ61353.1
Hypothetical protein.
  
  
  0.546
OPJ60728.1
Methyltransferase domain protein.
  
     0.541
OPJ64558.1
Beta-monoglucosyldiacylglycerol synthase.
  
     0.530
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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