Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dsbDThiol:disulfide interchange protein DsbD. (226 aa)    
Predicted Functional Partners:
resA
Thiol-disulfide oxidoreductase ResA.
  
 0.996
lgt_1
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
       0.683
msrB
Peptide methionine sulfoxide reductase MsrB.
  
  
 0.646
zupT
Zinc transporter ZupT; Mediates zinc uptake. May also transport other divalent cations; Belongs to the ZIP transporter (TC 2.A.5) family. ZupT subfamily.
   
    0.638
nasF
uroporphyrinogen-III C-methyltransferase.
  
    0.595
bcp
Putative peroxiredoxin bcp.
 
  
 0.497
hemL1
Glutamate-1-semialdehyde 2,1-aminomutase 1; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 0.479
hemL
Glutamate-1-semialdehyde 2,1-aminomutase.
  
  
 0.479
trxB_4
Thioredoxin reductase.
 
  
 0.464
OPJ61371.1
acetyl-CoA decarbonylase/synthase complex subunit alpha.
  
    0.425
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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