Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OPJ65945.1Bacterial regulatory protein, tetR family. (198 aa)    
Predicted Functional Partners:
OPJ59848.1
DNA-binding transcriptional repressor FabR.
  
     0.753
OPJ59244.1
Hypothetical protein.
  
     0.705
srpR
HTH-type transcriptional regulator SrpR.
  
     0.669
OPJ65667.1
Hypothetical protein.
  
     0.646
OPJ65946.1
Hypothetical protein.
     
 0.528
OPJ59029.1
Hypothetical protein.
  
     0.497
mdtA
Multidrug resistance protein MdtA; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
     
 0.417
swrC
Swarming motility protein SwrC; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
     
 0.413
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.400
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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