STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
degA_1HTH-type transcriptional regulator DegA. (350 aa)    
Predicted Functional Partners:
kdgR_1
HTH-type transcriptional regulator KdgR.
  
     0.772
gltB_1
Ferredoxin-dependent glutamate synthase 1.
    
 
 0.756
ptsH
Phosphocarrier protein HPr.
   
 
 0.732
pyk_2
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 
 0.717
pyk_3
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 
 0.717
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
   0.697
guaB_3
Inosine-5'-monophosphate dehydrogenase.
    
 
 0.697
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
   0.697
sacX
Negative regulator of SacY activity.
    
 0.694
bglF_1
PTS system beta-glucoside-specific EIIBCA component.
    
 0.694
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.