Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yteP_2Putative multiple-sugar transport system permease YteP. (317 aa)    
Predicted Functional Partners:
araQ_5
L-arabinose transport system permease protein AraQ.
 
 
 0.970
lipO_1
Lipoprotein LipO precursor.
 
 
 0.966
lacG_2
Lactose transport system permease protein LacG.
 
 
 0.864
araQ_2
L-arabinose transport system permease protein AraQ.
 
 
 0.863
lipO_2
Lipoprotein LipO precursor.
 
 
 0.842
OPJ66061.1
Hypothetical protein.
 
 
 0.832
OPJ66077.1
Bacterial extracellular solute-binding protein.
 
 
 0.825
yesO_1
Putative ABC transporter substrate-binding protein YesO.
 
 
 0.738
msmE_5
Multiple sugar-binding protein precursor.
 
 
 0.713
yesO_2
Putative ABC transporter substrate-binding protein YesO.
 
 
 0.704
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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