Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lipO_1Lipoprotein LipO precursor. (537 aa)    
Predicted Functional Partners:
araQ_5
L-arabinose transport system permease protein AraQ.
 
 0.976
yteP_2
Putative multiple-sugar transport system permease YteP.
 
 
 0.966
araQ_2
L-arabinose transport system permease protein AraQ.
 
 0.882
yteP_3
Putative multiple-sugar transport system permease YteP.
 
 
 0.878
lacG_2
Lactose transport system permease protein LacG.
 
 0.871
yteP_1
Putative multiple-sugar transport system permease YteP.
 
 
 0.868
sugC_1
Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.
  
 0.837
sugC_2
Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.
  
 0.837
lipO_2
Lipoprotein LipO precursor.
  
  
 
0.809
lacF_4
Lactose transport system permease protein LacF.
 
 0.786
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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