STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lipO_1Lipoprotein LipO precursor. (537 aa)    
Predicted Functional Partners:
araQ_5
L-arabinose transport system permease protein AraQ.
 
  0.978
yteP_2
Putative multiple-sugar transport system permease YteP.
 
 
 0.971
yteP_3
Putative multiple-sugar transport system permease YteP.
 
 
 0.895
araQ_2
L-arabinose transport system permease protein AraQ.
 
  0.893
yteP_1
Putative multiple-sugar transport system permease YteP.
 
 
 0.886
lacG_2
Lactose transport system permease protein LacG.
 
  0.883
lipO_2
Lipoprotein LipO precursor.
  
  
 
0.848
sugC_1
Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.
  
 0.810
sugC_2
Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.
  
 0.810
sacA_1
Sucrose-6-phosphate hydrolase; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
 
     0.783
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.