Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
manZ_1Mannose permease IID component. (273 aa)    
Predicted Functional Partners:
manX_1
PTS system mannose-specific EIIAB component.
 
 0.998
manY_1
Mannose permease IIC component.
 0.998
manX_5
PTS system mannose-specific EIIAB component.
 
 0.998
manY_3
Mannose permease IIC component.
 0.994
manY_2
Mannose permease IIC component.
 0.991
manX_2
PTS system mannose-specific EIIAB component.
 
 0.987
manX_8
PTS system mannose-specific EIIAB component.
 
 0.973
manX_3
PTS system mannose-specific EIIAB component.
 
 0.969
manX_7
PTS system mannose-specific EIIAB component.
 
 0.969
manX_4
PTS system mannose-specific EIIAB component.
 
 0.968
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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