STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lytA_1Autolysin. (886 aa)    
Predicted Functional Partners:
sacX
Negative regulator of SacY activity.
  
 
 0.926
bglF_1
PTS system beta-glucoside-specific EIIBCA component.
  
 
 0.926
bglF_2
PTS system beta-glucoside-specific EIIBCA component.
  
 
 0.926
ptsG_4
PTS system glucose-specific EIICBA component.
  
 
 0.926
bglF_4
PTS system beta-glucoside-specific EIIBCA component.
  
 
 0.926
ptsG_5
PTS system glucose-specific EIICBA component.
  
 
 0.926
fruA_1
PTS system fructose-specific EIIABC component.
   
 
 0.894
fruA_3
PTS system fructose-specific EIIABC component.
   
 
 0.894
manX_5
PTS system mannose-specific EIIAB component.
   
 
 0.764
malP_2
PTS system maltose-specific EIICB component.
  
 
 0.749
Your Current Organism:
Clostridium chromiireducens
NCBI taxonomy Id: 225345
Other names: C. chromiireducens, Clostridium chromiireducens Inglett et al. 2011, DSM 23318, KCTC 5935, strain GCAF-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.